C:>mysql_check -u [user] -p[password] --repair --all-databases
This will repair your databases. This does not work on InnoDB.
C:>mysql_upgrade -u [user] -p[password] --all-databases
This will upgrade your databases.
This fixes the 'column count of mysql.proc is wrong' error when using MySQL Workbench on a databases that has been created with MySQL Server earlier than 5.2
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